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The Microbiome Explained

July 21, 2022

You may be hearing a lot lately about “gut health” and your gut microbiome. In this “primer”, I’m going to help simplify this exciting area of science, highlight why you need to be paying attention to your gut health, and the things you can start doing today to help support or restore your gut microbiome.

A bowl of coconut yogurt which is rich in probiotics made with cherries, granola and hemp seed

The health of our gut microbiome is vital to our overall health. We have a symbiotic relationship with the microbes that live on and in our bodies. By focusing specifically on our gut microbiome, and what we are putting into our bodies to feed that microbiome, we have the potential to greatly impact our overall health and wellness from our skin, to our weight, to reducing autoimmune disease!

What is the Microbiome?

Did you know that we are actually not living alone in our bodies?? Our bodies are filled with trillions of microorganisms – which include bacteria, fungi, parasites and viruses – which form “microbiomes” on our skin, in our mouths and other body parts. The microbes on our body outnumber our cells 10-1!

“The microbiome is the community of microorganisms (such as fungi, bacteria and viruses) that exists in a particular environment. In humans, the term describes the microorganisms that live in or on a particular part of the body, such as the skin or gastrointestinal tract.”

– Genome.gov

What is the Gut Microbiome?

The largest population of microbes is found in our intestines – known as the gut microbiome or gut microbiota (the microorganisms that live in your gut microbiome). The gut microbiome varies from person to person and really in the last 20 years has science begun to uncover the significance of the gut microbiome on almost all aspects of our health.[R]

Everybody has a unique gut microbiome, just like we all have unique genomes. You are first exposed to microbes in your mother’s womb and your microbiome continues to be affected by your environment, medications, and diet (more on that later!).

What Does the Microbiome Do?

The microbiome consists of microbes that are both “good” and “bad” – most bacteria help the human body but some can promote disease. In a healthy body, there is a balance of bacteria. But if there is a disturbance in that balance—brought on by illness, certain diets, or bacteria-destroying medications—dysbiosis occurs, stopping these normal interactions. As a result, the body may become more susceptible to disease. [R]

Our gut microbiota has been shown to affect:

  • appetite and metabolism [R]
  • inflammation [R]
  • hormones [R]
  • cancer growth [R]
  • allergies [R]
  • lipids [R]
  • how we utilize nutrients [R]
  • mental health [R]
  • response to chemotherapy and immunotherapy [R], [R]

Signs Your Gut Microbiome Isn’t Healthy

If your gut isn’t healthy, your body sends some obvious signals such as:

  • gas
  • bloating
  • irregularity
  • diarrhea or constipation

However, gut issues can also manifest as:

  • sugar cravings
  • poor concentration or memory
  • fatigue
  • acne
  • weight gain
  • inability to lose weight

An imbalance of gut microbes have been linked to gastrointestinal disorders (such as IBS) and wider systemic inflammatory disorders such as diabetes and obesity.

What Causes Gut Issues?

Poor diet is one of the biggest causes of gut imbalance (which makes sense if you think about how its our gut that comes into direct contact with what we put in our body and breaks down our food). As our food digests, our microbiome changes in real time! Some “gut-busting foods” include:[R]

  • processed foods (boxed, packaged with additives such as preservatives and emulsifiers)
  • sugar (high intensity sweeteners, excess sugar)
  • excess starches

Other factors which can contribute to gut issues include:

  • antibiotic use – kills the good bacteria along with the bad
  • smoking
  • alcohol use
  • antacids (such as Pepcid) – alters the pH in the gut, and eliminate the first line of defense against ingested pathogens which gives “bad” bacteria an opportunity to get to the gut and disrupt good bacteria.
  • NSAIDs – disrupt the normal balance of bacteria living in your gut
  • travel – disrupted sleep cycles in addition to taking in foods which have microbes which are “foreign’ to your body can disrupt your bacteria balance

Can You Restore Your Gut Microbiome?

The good news is that you can absolutely manipulate your gut microbiota through nutrition and health interventions! There have been multiple studies which have shown how making changes to the consumption and lifestyle habits resulted in remarkable differences in a person’s gut microbiome in just two weeks.[R]

How To Improve Gut Health Naturally

Research has shown that increasing “prebiotic” and “probiotic” foods has several beneficial effects on our health and that diet has a very strong influence on the composition of our gut microbiota. What is still unclear is whether natural foods are better than probiotic supplements. While you can supplement with a high-quality probiotic (here’s my favorite), you can’t “supplement” a bad diet. Here are steps you can start taking to improve your guy health naturally.

What to Avoid

  • Highly processed or packaged foods
  • Refined grains, especially wheat
  • Sugars, especially high fructose corn syrup, and artificial sweeteners
  • Refined oils and fats, especially soybean and corn oil
  • Overuse of antibiotic drugs (use when absolutely necessary)
  • Steroids
  • Anti-inflammatories such as ibuprofen, Advil, aspirin
  • Acid blockers, such as Tums
Cashews, garlic, oats, cold potatoes, artichokes, asparagus and baby spinach are all examples of prebiotic foods.

Prebiotics

The good bacteria in our gut is fed by plant-based foods that are high in fiber. By eating these foods we allow the good bacteria to thrive and starve the bad bacteria. Below is a partial list of some “prebiotic” foods to incorporate into your diet to ensure you are feeding your good bacteria.

  • Leafy green vegetables (of course!)
  • Onions
  • Whole oats (not the packaged kind with sugar)
  • Garlic
  • Leeks
  • Asparagus
  • Artichokes
  • Sunchokes (or jerusalem artichokes)
  • Nuts and seeds
  • Legumes/pulses
  • Apples (buy organic!)
  • Under-ripe bananans
  • Potatoes and rice that have been cooked and then cooled
Examples of probiotic foods such as miso, sauerkraut, tempeh and yogurt

Probiotic/Fermented Foods

  • Naturally fermented sauerkraut
  • Pickled vegetables (including organic pickles)
  • Kimchi (the Korean version of fermented vegetables or fruit)
  • Kefir (fermented milk—unsweetened only)
  • Sourdough bread
  • Miso
  • Tamari
  • Tempeh
  • Tofu
  • Unpasturized apple cider vinegar
  • Coconut yogurt

The gut microbiome should be considered a key aspect in nutrition. By targeting the microbiome with probiotic foods and dietary fiber, people could greatly improve their health from lowering in incidence of auto-immune disease to reducing obesity! This article just really scratches the surface about the microbiome and gut health! I look forward to publishing additional articles diving deeper into the role of gut health.

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TAGS:Gut Health
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What Does it Mean to “Eat Beautifully”?

Hi, I’m Jeannine
Hi, I’m Jeannine

Hi, I’m Jeannine

I'm a certified health and wellness coach with a passion for cooking and photographing beautiful, colorful, healthy food. I provide healthy plant-forward recipe inspiration for those who want to look and feel their healthiest from the inside out. I'm so glad you stopped by!

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Comment ‘DINNER’ and I’ll send you the 5 high protein and high fiber dinner recipes I make on repeat. [If you are on my email list check your inbox!]

When I polled my audience a few months ago, one thing I consistently heard is that you want to eat healthier but struggle with trying to meet your nutrition needs while also trying to feed your family or partner. 

This inspired me to develop and share this FREE e-book with 5 easy, 30 minute high-protein and high-fiber recipes which are easily deconstructed into “build your own bowl” meals to suit a variety of preferences. 

Even if you don’t follow them exactly, i hope you are inspired by the approach! 

#eatbeautifully #agebetter #fitmom #healthyrecipes #womenover40
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Comment ‘DINNER’ and I’ll send you the 5 high protein and high fiber dinner recipes I make on repeat. [If you are on my email list check your inbox!] When I polled my audience a few months ago, one thing I consistently heard is that you want to eat healthier but struggle with trying to meet your nutrition needs while also trying to feed your family or partner. This inspired me to develop and share this FREE e-book with 5 easy, 30 minute high-protein and high-fiber recipes which are easily deconstructed into “build your own bowl” meals to suit a variety of preferences. Even if you don’t follow them exactly, i hope you are inspired by the approach! #eatbeautifully #agebetter #fitmom #healthyrecipes #womenover40
3 months ago
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1/5
I’m about to blow your mind with these brownies.

Fudgy, flourless and nutrient rich. No gluten, no refined sugar. The dark cacao powder is full of antioxidants and magnesium and cashew butter provides healthy fat. This simple recipe is made with cashew butter, cacao powder, maple syrup, dark chocolate chips, eggs, vanilla and salt. You are going to be blown away! 

Cashew Butter Flourless Fudgy Brownies
-1 cup cashew butter
-2 large eggs
-3/4 cup dark chocolate chips (I love @enjoylife)
-1/2 cup maple syrup
-1/2 cup pure cacao powder
-2 tsp vanilla extract
-1/2 tsp baking soda
-1/4 tsp sea salt
Extra chocolate chips and salt for sprinkling options.

Preheat oven to 350.
Combine maple syrup and cashew butter. Add eggs and vanilla extract. Add cacao, baking powder and salt and mix until creamy. Add chocolate chips.
Pour batter into 9X12 parchment lined pan and bake at 350 for 20 minutes. Remove and let sit for 20-30 minutes to cool (necessary so they set!).

Enjoy!

#eatbeautifully #agebetter #fitmom #healthyrecipes
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I’m about to blow your mind with these brownies. Fudgy, flourless and nutrient rich. No gluten, no refined sugar. The dark cacao powder is full of antioxidants and magnesium and cashew butter provides healthy fat. This simple recipe is made with cashew butter, cacao powder, maple syrup, dark chocolate chips, eggs, vanilla and salt. You are going to be blown away! Cashew Butter Flourless Fudgy Brownies -1 cup cashew butter -2 large eggs -3/4 cup dark chocolate chips (I love @enjoylife) -1/2 cup maple syrup -1/2 cup pure cacao powder -2 tsp vanilla extract -1/2 tsp baking soda -1/4 tsp sea salt Extra chocolate chips and salt for sprinkling options. Preheat oven to 350. Combine maple syrup and cashew butter. Add eggs and vanilla extract. Add cacao, baking powder and salt and mix until creamy. Add chocolate chips. Pour batter into 9X12 parchment lined pan and bake at 350 for 20 minutes. Remove and let sit for 20-30 minutes to cool (necessary so they set!). Enjoy! #eatbeautifully #agebetter #fitmom #healthyrecipes
4 months ago
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2/5
One of the most common hormone imbalances in women may be causing your belly bloat.

Estrogen dominance affects women frequently in perimenopause. But wait, how can I be experiencing estrogen dominance while my estrogen is decreasing??

Read on for a mimi primer on what may be happening in your body and nutrition recommendations to support this imbalance. I got you!

Follow @eatbeautifullyblog to learn more about to thrive in perimenopause and for recipes, fitness and wellness strategies to age better and beautifully.

#perimenopause #fitmom #agebetter #eatbeautifully
One of the most common hormone imbalances in women may be causing your belly bloat.

Estrogen dominance affects women frequently in perimenopause. But wait, how can I be experiencing estrogen dominance while my estrogen is decreasing??

Read on for a mimi primer on what may be happening in your body and nutrition recommendations to support this imbalance. I got you!

Follow @eatbeautifullyblog to learn more about to thrive in perimenopause and for recipes, fitness and wellness strategies to age better and beautifully.

#perimenopause #fitmom #agebetter #eatbeautifully
One of the most common hormone imbalances in women may be causing your belly bloat.

Estrogen dominance affects women frequently in perimenopause. But wait, how can I be experiencing estrogen dominance while my estrogen is decreasing??

Read on for a mimi primer on what may be happening in your body and nutrition recommendations to support this imbalance. I got you!

Follow @eatbeautifullyblog to learn more about to thrive in perimenopause and for recipes, fitness and wellness strategies to age better and beautifully.

#perimenopause #fitmom #agebetter #eatbeautifully
One of the most common hormone imbalances in women may be causing your belly bloat.

Estrogen dominance affects women frequently in perimenopause. But wait, how can I be experiencing estrogen dominance while my estrogen is decreasing??

Read on for a mimi primer on what may be happening in your body and nutrition recommendations to support this imbalance. I got you!

Follow @eatbeautifullyblog to learn more about to thrive in perimenopause and for recipes, fitness and wellness strategies to age better and beautifully.

#perimenopause #fitmom #agebetter #eatbeautifully
One of the most common hormone imbalances in women may be causing your belly bloat.

Estrogen dominance affects women frequently in perimenopause. But wait, how can I be experiencing estrogen dominance while my estrogen is decreasing??

Read on for a mimi primer on what may be happening in your body and nutrition recommendations to support this imbalance. I got you!

Follow @eatbeautifullyblog to learn more about to thrive in perimenopause and for recipes, fitness and wellness strategies to age better and beautifully.

#perimenopause #fitmom #agebetter #eatbeautifully
One of the most common hormone imbalances in women may be causing your belly bloat.

Estrogen dominance affects women frequently in perimenopause. But wait, how can I be experiencing estrogen dominance while my estrogen is decreasing??

Read on for a mimi primer on what may be happening in your body and nutrition recommendations to support this imbalance. I got you!

Follow @eatbeautifullyblog to learn more about to thrive in perimenopause and for recipes, fitness and wellness strategies to age better and beautifully.

#perimenopause #fitmom #agebetter #eatbeautifully
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One of the most common hormone imbalances in women may be causing your belly bloat. Estrogen dominance affects women frequently in perimenopause. But wait, how can I be experiencing estrogen dominance while my estrogen is decreasing?? Read on for a mimi primer on what may be happening in your body and nutrition recommendations to support this imbalance. I got you! Follow @eatbeautifullyblog to learn more about to thrive in perimenopause and for recipes, fitness and wellness strategies to age better and beautifully. #perimenopause #fitmom #agebetter #eatbeautifully
4 months ago
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3/5
How many have you believed?
 
1) Women should intermittent fast – Research shows when active women add the stress of IF to our bodies, stress hormones like cortisol become even higher, having a downstream affect on all other hormones.
2)Carbs are bad for you - When our brain perceives we have a deficiency in carbs, we have a reduction in kisspeptin stimulation (a neuropeptide that’s responsible for endocrine + reproductive function), which increases our appetite, reduces insulin sensitivity AND puts stress on our body.
3) Low calorie diet for weight loss – Yes a caloric deficit is needed to lose fat, but if we are eating too low calorie our bodies will start to adapt and will lower our metabolism. This is why many women find they are eating barely anything but yet they can’t lose weight. Instead of decreasing calories, focus first on building muscle (and eating appropriately to fuel that muscle gain).
4)You don’t need to have a period – Every month, a woman's menstrual cycle can provide valuable insight into her overall health by indicating if her body is functioning normally through regular periods. Irregular periods or painful periods, in addition to severe PMS symptoms is an indicator that you have hormonal imbalances.
5) Lots of cardio for weight loss – Overemphasis on cardio can put your body in a catabolic state where it starts to burn lean muscle mass. Again, if all you are doing is cardio, your body will start to depend upon that external calorie burn. Instead you want to turn your body into a calorie-burning machine by maintaining and adding muscle mass.
6) Heavy weight will make you bulky / light weights will make you toned – It takes a lot of volume and a lot of calories to “get bulky”. When you start strength training, inflammation occurs and our body will hold onto water as it adapts to the new stimulus. Many women confuse this for getting bulky but by eating whole foods and giving yourself adequate recovery, over time this inflammation will subside.

Follow @eatbeautifullyblog to learn more about these topics and how to age better and beautifully.
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How many have you believed? 1) Women should intermittent fast – Research shows when active women add the stress of IF to our bodies, stress hormones like cortisol become even higher, having a downstream affect on all other hormones. 2)Carbs are bad for you - When our brain perceives we have a deficiency in carbs, we have a reduction in kisspeptin stimulation (a neuropeptide that’s responsible for endocrine + reproductive function), which increases our appetite, reduces insulin sensitivity AND puts stress on our body. 3) Low calorie diet for weight loss – Yes a caloric deficit is needed to lose fat, but if we are eating too low calorie our bodies will start to adapt and will lower our metabolism. This is why many women find they are eating barely anything but yet they can’t lose weight. Instead of decreasing calories, focus first on building muscle (and eating appropriately to fuel that muscle gain). 4)You don’t need to have a period – Every month, a woman's menstrual cycle can provide valuable insight into her overall health by indicating if her body is functioning normally through regular periods. Irregular periods or painful periods, in addition to severe PMS symptoms is an indicator that you have hormonal imbalances. 5) Lots of cardio for weight loss – Overemphasis on cardio can put your body in a catabolic state where it starts to burn lean muscle mass. Again, if all you are doing is cardio, your body will start to depend upon that external calorie burn. Instead you want to turn your body into a calorie-burning machine by maintaining and adding muscle mass. 6) Heavy weight will make you bulky / light weights will make you toned – It takes a lot of volume and a lot of calories to “get bulky”. When you start strength training, inflammation occurs and our body will hold onto water as it adapts to the new stimulus. Many women confuse this for getting bulky but by eating whole foods and giving yourself adequate recovery, over time this inflammation will subside. Follow @eatbeautifullyblog to learn more about these topics and how to age better and beautifully.
4 months ago
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4/5
SALSA VERDE CHICKEN SOUP
 
A soup that actually satisfies. If I’m going to eat soup I don’t want to be hungry an hour later. This makes a healthy weeknight dinner or lunch and only takes about 30 minutes of cooktime.
 
Thanks to the chicken and beans a serving of this soup has over 40 grams of protein. The beans, brown rice and veggies add over 12 grams of phyto-nutrient rich fiber which is great for your gut. The protein/high fiber combo is also great fo your blood sugar. I love to top with cilantro and avocado.

Serves 4 (about 2 hearty cups)
 
2 tablespoons of olive oil
1 cup red onion diced (about a medium red onion)
1 ½ cup of zucchini, cut into half moons (about 1 ½ medium zucchini)
3 garlic cloves minced
½ teaspoon oregano
2 cups mild or medium salsa verde
1 can of low sodium black beans, drained
4 cups of low sodium chicken broth
1 ½ pound shredded chicken
2 cups of brown rice (I used frozen)
1 teaspoon salt, more to taste
2 cups of baby spinach
1 tablespoon of lime juice
Garnish: cilantro, avocado and lime juice
 
Heat the olive oil in a large pot over medium heat. Add the onion and zucchini. Cook for 5 minutes and then add the garlic and oregano. Cook for another minute.

Add the salsa verde, black beans and broth. Bring to a boil and then turn to simmer for 15 minutes.

After 15 minutes add the brown rice, and shredded chicken. Cook for 5 more minutes. Stir in baby spinach and lime juice.
Serve with cilantro, avocado and a squeeze of lime.
 
Follow @eatbeautifullyblog for healthy recipes, nutrition and wellness advice to help you age better and more beautifully.

#eatbeautifully #agebetter #healthyrecipes #fitmom
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SALSA VERDE CHICKEN SOUP A soup that actually satisfies. If I’m going to eat soup I don’t want to be hungry an hour later. This makes a healthy weeknight dinner or lunch and only takes about 30 minutes of cooktime. Thanks to the chicken and beans a serving of this soup has over 40 grams of protein. The beans, brown rice and veggies add over 12 grams of phyto-nutrient rich fiber which is great for your gut. The protein/high fiber combo is also great fo your blood sugar. I love to top with cilantro and avocado. Serves 4 (about 2 hearty cups) 2 tablespoons of olive oil 1 cup red onion diced (about a medium red onion) 1 ½ cup of zucchini, cut into half moons (about 1 ½ medium zucchini) 3 garlic cloves minced ½ teaspoon oregano 2 cups mild or medium salsa verde 1 can of low sodium black beans, drained 4 cups of low sodium chicken broth 1 ½ pound shredded chicken 2 cups of brown rice (I used frozen) 1 teaspoon salt, more to taste 2 cups of baby spinach 1 tablespoon of lime juice Garnish: cilantro, avocado and lime juice Heat the olive oil in a large pot over medium heat. Add the onion and zucchini. Cook for 5 minutes and then add the garlic and oregano. Cook for another minute. Add the salsa verde, black beans and broth. Bring to a boil and then turn to simmer for 15 minutes. After 15 minutes add the brown rice, and shredded chicken. Cook for 5 more minutes. Stir in baby spinach and lime juice. Serve with cilantro, avocado and a squeeze of lime. Follow @eatbeautifullyblog for healthy recipes, nutrition and wellness advice to help you age better and more beautifully. #eatbeautifully #agebetter #healthyrecipes #fitmom
4 months ago
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5/5
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